Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKYVIFSFEEGDYLCDNKDKLLIFESRGLAYQYMQKHYLKPIPLQK---------TKRIMYPMSYYQAPFKVQQVC----------------------
1YN3 Chain:A ((157-254))
GSTVPYTITVNGTSQNILSNLTFNKNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTANLINSSDIKSININID
General information:
TITO was launched using:
RESULT:
Template:
1YN3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16105 for 337 contacts (-47.8/contact) +
2D Compatibility (PS) -6831 + (NN) 3570 + (LL) 0
1D Compatibility (HY) 400 + (ID) 350
Total energy: -19316.0 ( -57.32 by residue)
QMean score : 0.029
(partial model without unconserved sides chains):
PDB file :
Tito_1YN3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YN3-query.scw
PDB file :
Tito_Scwrl_1YN3.pdb
: