Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MI-NDKNRYRG-SLLAQSILK---EKVTRTVTK---DEMLETVNLDYRRLIIIQLVSIAFGGMAIWC-LIALVLLTVVGILICSLH---NDLPFVTAI-PIESPIKMIWLEGWQINVAIGLIGTFGIFLDKWATNKMDALREATDKKQLTKDYLAWKEEHNG
1QCZ Chain:A ((7-168))
PARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLEN-----PDPRGA
General information:
TITO was launched using:
RESULT:
Template:
1QCZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73589 for 963 contacts (-76.4/contact) +
2D Compatibility (PS) -14874 + (NN) -1778 + (LL) 492
1D Compatibility (HY) 9200 + (ID) 500
Total energy: -81049.0 ( -84.16 by residue)
QMean score : 0.101
(partial model without unconserved sides chains):
PDB file :
Tito_1QCZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QCZ-query.scw
PDB file :
Tito_Scwrl_1QCZ.pdb
: