Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MDEKYGVPRDIYAKVKIIGLVIADIVFVGGSAVAALSIGTRIFPTNQWPQLVAFMILTPLMCLYLVLPTNGGKKNWHSMFLFFRRRRKRYISLNYQRRENR
3VK6 Chain:A ((1-96))
VHFCDKCGLPIKVYGRMIPCKHVFC-------YDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSLFMCSIVQGCKRTYLSQRDLQAHINHRHMRAGKPVTRAS
General information:
TITO was launched using:
RESULT:
Template:
3VK6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25506 for 529 contacts (-48.2/contact) +
2D Compatibility (PS) -9676 + (NN) -1367 + (LL) 300
1D Compatibility (HY) -400 + (ID) 650
Total energy: -37299.0 ( -70.51 by residue)
QMean score : 0.085
(partial model without unconserved sides chains):
PDB file :
Tito_3VK6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VK6-query.scw
PDB file :
Tito_Scwrl_3VK6.pdb
: