Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKKLLRKEVLITLKSQPQAYKSEVDCKLLEAFIKTKAYQNSCVIATYLSFDYEYNTQLLIKQALCDGKRVLVPKTYPKGKMIFVDY-QKDNLRATPFGLLEPVNDR--AVEKASIDLIHVPGLIFNNKGFRIGYGAGYFDRYLSDFEGDTISTIYRCQRQDFVE-EKHDVAVKEVLCL
1YDM Chain:A ((4-179))
----QLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRGLEIPTRPVIEQAWEEGKQVCIPKC--TKKMQFRTYQTDDQLETVYAGLLEPV--KTKEVNPSQIDLMIVPGVCFDVNGFRVGFGGGYYDRYLSEYEGKTVSLLLECQLFAHVPRLPHDIPVHKLITE
General information:
TITO was launched using:
RESULT:
Template:
1YDM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89869 for 1246 contacts (-72.1/contact) +
2D Compatibility (PS) -18113 + (NN) -7571 + (LL) 236
1D Compatibility (HY) -12800 + (ID) 3100
Total energy: -131217.0 ( -105.31 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_1YDM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YDM-query.scw
PDB file :
Tito_Scwrl_1YDM.pdb
: