Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLQENKTAIFDNVSKLALKAGRAPESVHIVAVTKYV----NCQTTEALI-RTGVNHIGENRVDKFLEKYQA-LKDEKLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAAEIQKR--AQKPVKCFLQVNISREDSKHGFTIEQ-IDDALNLISRYDKIELIGIMTMAPLKATK--EEISSIFEETESLRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFFK
1BD0 Chain:A ((10-226))
--AEVDLDAIYDNVENLRRLLP---DDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIE--A-PILVLGASRPADAALAAQQ-RIALTVFRSDWLEEASALYSGPFPIHFHLKMDTGM--GRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWL----P--SRPPLVHCANSAASLRFPDRTFNMVRFGIAMYG
General information:
TITO was launched using:
RESULT:
Template:
1BD0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120906 for 1645 contacts (-73.5/contact) +
2D Compatibility (PS) -21795 + (NN) -4508 + (LL) 1144
1D Compatibility (HY) -2000 + (ID) 1600
Total energy: -149665.0 ( -90.98 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_1BD0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BD0-query.scw
PDB file :
Tito_Scwrl_1BD0.pdb
: