Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKELRSKLEKDYGIVFANQELLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISQYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKG------VEVVHAFVNKVMIPHVEKGTYERV-KDYKTSLQELLQSHGDVKIDYQVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNALATLQ
4M2Z Chain:B ((6-218))
------QLEKKLGYTFKDKSLLEKALTHVSYSKK------EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEG---RVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKI-KEYRTLGEGKSKKEAEQRAAEELIKLLE
General information:
TITO was launched using:
RESULT:
Template:
4M2Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83035 for 1473 contacts (-56.4/contact) +
2D Compatibility (PS) -22521 + (NN) -12314 + (LL) 1312
1D Compatibility (HY) -18800 + (ID) 3800
Total energy: -139158.0 ( -94.47 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_4M2Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M2Z-query.scw
PDB file :
Tito_Scwrl_4M2Z.pdb
: