Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDAKFDFAKLLVYKAGQFIKSEMQNTFDVEEKSRFDDLVTSLDKKTQKLLIQEIIQHYPDDNILAEE---DDVRSPIAQGNVWVLDPIDGTVNFIVQKDNFAVMLAYYEEGVGQFGIIYDVMADILYSGGGHFDVYANDKKIVPFQECPLERCLLGVNSAMYAENDCG--IAHLASETLGVRIYGGAGISMAKVMQGKLLAYFS-YIQPWDYAAAKIMGETLGFTLLTLDGEEPNYSTRQKVMFLPKSKLNLIQSYLTKK
3T0J Chain:C ((10-223))
--ALYGFAQGLIQEAGIRIKQLMEQNLT-------NDLVTNVDKATEDFIFDTILETYPNHQVLGEEGHGHDIDT--SKGTVWVVDPIDGTLNFVHQQENFAISIGIYIDGKPYAGFVYDVMADVLYHAKVGEGAYRGSQPLKPLNDSNLRQSIIGINPNWLTKPILGEIFKEIVNDSRSARAYGSAALEIVSVATGNLEAYMTPRLQPWDFAGGLVILYEVNGQASNLLGEPLTISGPNSILVGNRGLHQEISNDYLEP
General information:
TITO was launched using:
RESULT:
Template:
3T0J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144509 for 1589 contacts (-90.9/contact) +
2D Compatibility (PS) -21491 + (NN) -10083 + (LL) 864
1D Compatibility (HY) -18400 + (ID) 3500
Total energy: -197119.0 ( -124.05 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_3T0J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T0J-query.scw
PDB file :
Tito_Scwrl_3T0J.pdb
: