Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRLEIVDSKLRQAKKTEEYFNAIRTNIQFSGKENKI--LAITSVREGEGKSTTSTSLALSLAQAGFKTLLIDADTRNSVMSGTFKATGTIKGLTNYLSGNADLGDIICETNVPRLMVVPSGKVPPNPTALLQNAYFNKMIEAIKNIFDYIIIDTPPIGLVVDAAIIANACDGFILVTQAGRIKRNYVEKAKEQMEQSGSKFLGIILNKV--NESVATYGDYGDYGNYGKRDRKRK
2VED Chain:B ((64-267))
------------------EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGMSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNN-EGLSSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTD-----------
General information:
TITO was launched using:
RESULT:
Template:
2VED.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128654 for 1641 contacts (-78.4/contact) +
2D Compatibility (PS) -22030 + (NN) -10555 + (LL) 1960
1D Compatibility (HY) -16400 + (ID) 3400
Total energy: -179079.0 ( -109.13 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_2VED.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VED-query.scw
PDB file :
Tito_Scwrl_2VED.pdb
: