Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLNNYIASIENYPQEGITFRDISPLMADGKAYSYAVREIVQYAADKDIDMIVGPEARGFIVGCPVAYALGIGFAPVRKPGKLPREVISADYEKEYGLDTLTMHADAIKPGQRVLIVDDLLATGGTVKATIEMIEKLGGVVAGCAFLVELDGLNGRKAIEGYDTKVLMNFPG
4M0K Chain:C ((31-190))
--LKQAIRTVPDFPEPGIQFKDITPVLGHPELLRLAIEALLEPFQEQEITKVVGIESRGFILGGMLAHHLDAGFVPVRKKGKLPYQTLAESYQLEYGTDTIEMHIDAIEPGDRVLIHDDVIATGGTAEATIRLVERAGGEVVGCAFLIELTGLQGRKRLPAHVPVHTVLQL-
General information:
TITO was launched using:
RESULT:
Template:
4M0K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140546 for 1224 contacts (-114.8/contact) +
2D Compatibility (PS) -16841 + (NN) -1860 + (LL) 56
1D Compatibility (HY) -13600 + (ID) 3700
Total energy: -176491.0 ( -144.19 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_4M0K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M0K-query.scw
PDB file :
Tito_Scwrl_4M0K.pdb
: