Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MIKATFTRNQSGYLYSAEISGHAGSGEYGF---DVICAAVSTLSINFINSLEALTTCQAQLIINDVEGGYMKIDLSSIPQHKEDKVQLLFESYLLGMTNLSKDSSEFVSTIVMTH-----------
1SSF Chain:A ((7-129))
NSFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGYECDVLGKDILLCDPIPLDTEVTALS-----EDEYF--SAGVVKGHRKESGELYYSIEKEGQRKWYKRMAVILSLEQGNRLREQYGLGPYE
General information:
TITO was launched using:
RESULT:
Template:
1SSF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32130 for 721 contacts (-44.6/contact) +
2D Compatibility (PS) -11172 + (NN) -560 + (LL) 712
1D Compatibility (HY) -2800 + (ID) 1000
Total energy: -46950.0 ( -65.12 by residue)
QMean score : 0.120
(partial model without unconserved sides chains):
PDB file :
Tito_1SSF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SSF-query.scw
PDB file :
Tito_Scwrl_1SSF.pdb
: