Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYEKLLERFLTYVKINTRSNPNSTQTPTTQSQVDFALTVLKPEMEAIGLKDVHYLPSNGYLVGTLPATSDRLCHKIGFISHMDTAD-FNAENITPQIV-DY-KGGDIELGDSGYILSPKDFPNLNNYHGQTLITTD------GKTLLGADDKSGIAEIMTAMEYLASHPEIEHCEIRVGFGPDEEIGIGADKFDVKDFDVDFAYTVDGGPLGELQYETFSAAGLELTFEGRNVHPGTAKNQMINALQLAMDFHSQLPENERPEQTDGYQGFYHLYDLSGTVDQAKSSYIIRDFEEVNFLKRKHLAQDIADNMNEAL-QSERVKVKLYDQYYNMKKVIEKDMT-PINIAKEVMEELDIKPIIEPIRGGTDGSKISFMGIPTPNLFAGGENMHGRFEFVSLQTMEKAVDVILGIVAKD |
| 1FNO Chain:A ((1-403)) | --MDKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRL-LKQQLEEMGLV-NITLSEKGTLMATLPANVEGDIPAIGFISHVDTSPDFS-GKNVNPQIVENYRGGDIALGIGDEVLSPVM------FPVLHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLKGNP-IPHGDIKVAFTPDEEVGKGAKHFDVEAFGAQWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADEAPETTEGYEGFYHLASMKGTVDRAEMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMRE-KVVEHPHILDIAQQAMRDCHITPEMKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELT |
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General information:
TITO was launched using:
| RESULT:
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Template: 1FNO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -103881 for 3321 contacts (-31.3/contact) +
2D Compatibility (PS) -41994 + (NN) -20512 + (LL) 664
1D Compatibility (HY) -32800 + (ID) 9150
Total energy: -207673.0 ( -62.53 by residue)
QMean score : 0.510
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