Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MITIDKILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGAT-FKKEYLDSAITAGLSFYVSEIDYGADIPVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKV-NHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLVMEVSSQAY-LT-KRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFFHKRLLMEN---SNAVVVNSQMDHFNIVKEQVEYIPHDFYGDYSE--N-----VITESQA--FSFHVKGKLENTYDIKLIGKFNQENAIAAGLACLRLGVSIEDIKNGIA-QTTVPGRMEVLTQTNGAKIFVD-YAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKG---QSRRKDFGDVINQHPNLQVILTADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNC-KLDAIIIAGKGADAYQIIKGNRDNYSGDLEVAKKYLKR |
| 1GG4 Chain:A ((12-439)) | --------------------ILNGELQ---GADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQ--VPARVVALTGSSGKTSVKEMTAAILSQCGNTLYT---AGNL-------NNDIGVPM--TLLRL-----TPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLA----------SLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTP-TGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMP-GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQS-----HAISTASG-----VGEHFADKTALITRLKLLIAEQQVITILV--KGSRSAAMEEVVRALQ------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GG4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -57226 for 3157 contacts (-18.1/contact) +
2D Compatibility (PS) -38835 + (NN) 18381 + (LL) 4008
1D Compatibility (HY) 16800 + (ID) 2400
Total energy: -59272.0 ( -18.77 by residue)
QMean score : 0.198
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