Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLRRSERMVVISNYLINNPYTLTSLNTFASKYGAAKSSISEDIAIIKKAFEQAQIGDIKTVTGASGGVIFTPTIAEAEAKEIVEELRQRLSENDRILPGGYIYLSDLLSTPKMLQSIGRIVANAYRGQKIDAVMTVATKGVPLANAVANVLDVPFVIVRRDLKITEGSTVSVNYASGSSGRIEKMFLSKRSLKPNSRVLIVDDFLKGGGTVSGMISLLSEFDSTLVGVAVFAE-NAQEQREKMAYKSLLRVSEIDVKNNRVSVEAGNIFD
1P4A Chain:C ((2-270))
-KFRRSGRLVDLTNYLLTHPHELIPLTFFSERYESAKSSISEDLTIIKQTFEQQGIGTLLTVPGAAGGVKYIPKMKQAEAEEFVQTLGQSLANPERILPGGYVYLTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDN---EGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVEAEGVDERLVDEYMSLLTLSTINMKEKSIEIQNGNFLR
General information:
TITO was launched using:
RESULT:
Template:
1P4A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -195449 for 2086 contacts (-93.7/contact) +
2D Compatibility (PS) -28856 + (NN) -10023 + (LL) 528
1D Compatibility (HY) -31200 + (ID) 6750
Total energy: -271750.0 ( -130.27 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_1P4A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P4A-query.scw
PDB file :
Tito_Scwrl_1P4A.pdb
: