Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQGRIVKSLAGFYYVESDGVVYQTRARGNFRKKGQIPYVGDWVEFSSQDQSEGYILSIEERKNSLVRPPIVNIDQAVVIMSAKEPDFNANLLDRFLVLLEYKMIQPIIYISKLDLL--DDLVVIDDIREHYQNIGYVFCYSQ------EELLPLLADKVTVFMGQTGVGKSTLLNKIAPELKLETGEISDSLGRGRHTTRAVSFYNVH-KGKIADTPGFSSLDYEVDNAEDLNESFPELRRLSHFCKFRSCTHTHEPKCAVKEALTQGQLWQVRYDNYLQFLSEIENRRETYKKVIKRK |
1U0L Chain:B ((37-299)) | ------------------------KLRGKFRLQNLKIYVGDRVEYTPDETGSGVIENVLHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR-------------TTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEFG--DKQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYELLGRR---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U0L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145783 for 1823 contacts (-80.0/contact) +
2D Compatibility (PS) -25629 + (NN) -13034 + (LL) 3228
1D Compatibility (HY) -19200 + (ID) 4450
Total energy: -204868.0 ( -112.38 by residue)
QMean score : 0.517
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