Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-------------------------------------------------MFGTIFNTVMIIAGSIIGGIFKKGIKDEYQDILMQAMGFAAVALGINAITQHLPDSKYPILFIVSLAIGGLLGQIINLELRFNKLVNKF---SKSNLAEGLSTA------VLLFCIGSLSILGPVEAALH--GDYTYLLTNGMLDGITSIVLASTFGFGIAAAALVLFS-WQGSIYLFAQVMESAINTDLINEITIVGGILILSSGLSILGIK---KFKTLNLLPSLLIPPVVI-----------FVIH------AFGLRF
4XGC Chain:A ((38-388))PCREREFENIYAFLEGKIQDQCMYVSGVPGTGKTATVTGVIRTLQEYLEINGMRLTEPRQAYVQIYKQLTGKTVSWEQAHALLEKRTTVLLVDELDILCNRRQDVVYNLLDWPTKLVVVTIANTMDLPERLGLTRLTFQPYSHKQLQEIVTARLGKGEAVQLVARKVAAVSGDARRALDICRRATEIADTAAVKCVTMLHVQQALAEMIASAKVQAIRNCSRMEQIFLQAIAAEVTRTGVEETTFMGVYQQVETIAAFMGVTFPPPGRALRLCSKLGAERLIISEHSRNDLFQKILLNVSADDIHYALRV


General information:
TITO was launched using:
RESULT:

Template: 4XGC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 855 -167177 -195.53 -730.03
target 2D structure prediction score : 0.45
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -195.53
2D Compatibility (Sec. Struct. Predict.) : 0.45
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.212

(partial model without unconserved sides chains):
PDB file : Tito_4XGC.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4XGC-query.scw
PDB file : Tito_Scwrl_4XGC.pdb: