Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYADRDLPGAGGLAVRVIPCLDVDDGR--VVKGVNFENLRDAGDPVELAAVYDAEGADELTFLDVTASSSGRATMLEVVRRTAEQVFIPLTVGGGVRTVADVDSLLRAGADKVAVNTAAIACPDLLADMARQFGSQCIVLSVDARTVPVGSAPTPSGWEVTTHGGRRGTGMDAVQWAARGADLGVGEILLNSMDADGTKAGFDLALLRAVRAAVTVPVIASGGAGAVEHFAPAVAAGADAVLAASVFHFRELTIGQVKAALAAEGITVR
1H5Y Chain:B ((3-252))
------------MALRIIPCLDIDGGAKVVVKGVNFQGIREVGDPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKW-------NGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRYLKERGVEVR
General information:
TITO was launched using:
RESULT:
Template:
1H5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178065 for 2195 contacts (-81.1/contact) +
2D Compatibility (PS) -27659 + (NN) -15042 + (LL) 104
1D Compatibility (HY) -25200 + (ID) 7200
Total energy: -253062.0 ( -115.29 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_1H5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H5Y-query.scw
PDB file :
Tito_Scwrl_1H5Y.pdb
: