Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTDEDLIRAALAVAATAGPR-DVPVGAVVVGADGTELARAVNAREALGDPTAHAEILAMRLAAGVLGDGWRLEGTTLAVTVEPCTMCAGALVLARVARLVFGAWEPKTGAVGSLWDVVRDRRLNHRPEVRGGVLARECAAPLEAFFARQRLG
2B3J Chain:C ((4-152))
MTNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEV-IARAHNLRETLQQPTAHAEHIAIERAAKVLG-SWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLR--
General information:
TITO was launched using:
RESULT:
Template:
2B3J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109879 for 1267 contacts (-86.7/contact) +
2D Compatibility (PS) -16132 + (NN) -6836 + (LL) 32
1D Compatibility (HY) -13600 + (ID) 3500
Total energy: -149915.0 ( -118.32 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_2B3J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B3J-query.scw
PDB file :
Tito_Scwrl_2B3J.pdb
: