Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFKSLHQYAHVFSRLSLFGLAFAAAAQAQSQSLTVISFGGATKAAQEQAYFKPFERSGGGQVVAGEY--NGEMAKVKAMVDVGKVSWDVVEVESPELLRGCDEGLFERLDPARFGDPAQFVPGTF----SECGVATYVWSMVMAYDSTKLARAPQSWADFWNVREFPGKRGL----RKG-AKYTLEVALLADGVKAEDLYKVLATPEGVSRAFAKLDQLKPNI-QWWEAGAQPPQWLAAGDVVMSAAYNGRIAAAQK-EGVKLAIVWP--GSLYDPEYWAVVKGTPNKALAEKFIAFASQPQTQKVFSEQIPYGPVHKGTLALLPKTVQEALPTAPANLEGARAVDAEFWVDHGEELEQRFNAWAAR |
| 3PU5 Chain:A ((3-323)) | ---------------------------LADDHIYVTSSGGSFLENVRKHMAEPFEKQSGVKVTLVPGTNPAHALKILSS--RGTPPYDVAAFGGNDMYRLIRAKKLAQVDEKSVPSLA-DVPEKFKADWEGCGSLYDYSSVGIAYRPDKIQGGVKSWKEFVERT-VAGEFGKQVFFNNLSSNVRGAEVLSMFGKIYGS------GYGDIEASIATLERMKPHIFKFFTAFNDPVVLLTSGEGAIGPGWDGRTFIAEDSTKGMVKWVDPTEGAVSSGPVMAVVKGGK-EDLAKAFMNYALGEEAQKAFCEAMYYGAVNRKVQ--YSEKLKHRLPS----IDSVQLVDTALLIKNMSALLDLWNKRIA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PU5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -82227 for 2564 contacts (-32.1/contact) +
2D Compatibility (PS) -33219 + (NN) -15767 + (LL) 4460
1D Compatibility (HY) -14000 + (ID) 3450
Total energy: -144203.0 ( -56.24 by residue)
QMean score : 0.425
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