Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKMMQGAAALIALVGAGESMALEWMSNSVGFRYGQQFTNPNNPDKFAKRIYSFTHADGYRYGSNFFNLDVFLSDNRDPRKGTDHGGSEVYAVYRHQLYASRVFDRPLGTGLVKDYAFTLGFDASRNNNLASAKKRALVFGPTLKFNGPGVLDLSLLYYREKNHFGVPGARHPDHTFDTTYMLNLTWMRPFKVGNHAAKFQGFVNYVGDKGEDYNDKHTAAETLVRTALMVAALPGDKRQPNLWLGVGYEYWHNKFGVDGGTGSRTSTPTLNMEFTF |
| 3J6V Chain:O ((54-256)) | TQKPVQQSQED----DPPPSMLLKDYQNVPG---------IEKVDDVVKRLISLEMANKKEMLK--IKKEQLMSKVVENPKDTSSLEAQIVALTVKIRSYEEHMQKHQKDK------------AHKRYLLMSIDKRQKMLKNLRKTN----------YPVFEKTCKELG---IEYTFPPPYHR--------KIHRRLATKKALCIRVFQEVQKLKKQKRALKTA-----AAAAQKQGQRNP---------------------ESPSEARSEAIKETQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3J6V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 28535 for 1227 contacts (23.3/contact) +
2D Compatibility (PS) -21399 + (NN) -5103 + (LL) 4496
1D Compatibility (HY) 0 + (ID) 1950
Total energy: 4579.0 ( 3.73 by residue)
QMean score : -0.013
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