Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSLHLDALHWSPDASTELLRGVHLEVPAGSFVGLIGPNGSGKTSLLRCAFRYARPQRGRVVLDGDDL--WRQPPRWAARRIAVVLQEFP--------EDFGLAVEDVVAMGRTPHKGLFDGHGADDRQRVRQALLQVGLEGRAASPFASLSGGEKQRALLARALVQEPRLLILDEPTNHLDPRYQLELLRLLRSL---GLSTLASFHDLNLAAAFCDRLYVLDGGRIVAQGTPTEVLDADLLWRVFGVRALVDRHPLADHPRLTWITQA
4YMV Chain:A ((8-224))
----------YKNFGSLEVLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINNGKVNINKVRQKVGMVFQHFNLFPHLTAIENITLAPVKVKKMNKKEAEEL-----AVD------LLAKVGLLDKKDQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANEGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIF--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4YMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128208 for 1580 contacts (-81.1/contact) +
2D Compatibility (PS) -22539 + (NN) -14888 + (LL) 3960
1D Compatibility (HY) -18400 + (ID) 3750
Total energy: -183825.0 ( -116.34 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_4YMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMV-query.scw
PDB file :
Tito_Scwrl_4YMV.pdb
: