Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSSRPYLVRALYEWIVDNDCTPHILVNAEFAGVKVPPGYASDGQIVLNVSPSAVRHLHMDNEAVSFEGRFGGVAQSLYIPALAVMAIYARENGQGMVFDLEQPGPVDDEPGDDDGGPSDEPPRPSGRPSLKVVK
1YFN Chain:C ((6-107))
LTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPE---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96563 for 710 contacts (-136.0/contact) +
2D Compatibility (PS) -10990 + (NN) -3529 + (LL) -1112
1D Compatibility (HY) -12800 + (ID) 2650
Total energy: -127644.0 ( -179.78 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_1YFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YFN-query.scw
PDB file :
Tito_Scwrl_1YFN.pdb
: