Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYERA
3JSQ Chain:A ((1-131))
-CDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDLVTIRSESTFKNTEISFKLGVEFDEITADDRKVKSIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVECVMKGVTSTRVYERA
General information:
TITO was launched using:
RESULT:
Template:
3JSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41442 for 941 contacts (-44.0/contact) +
2D Compatibility (PS) -14634 + (NN) -3309 + (LL) 208
1D Compatibility (HY) -16800 + (ID) 6000
Total energy: -81977.0 ( -87.12 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_3JSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JSQ-query.scw
PDB file :
Tito_Scwrl_3JSQ.pdb
: