Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIHCTVPSRPWWHFADYGCYCGRGGKGTAVDDLDRCCQVHDNCYGEAEKL-GCWPYLTLYKYECSQGKLTCSGGNNKCEAAVCNCDLVAANCFAGAPYIDANYNVNLKERCQ
1YXH Chain:A ((8-126))
NIYQFKNMIQCTVPSRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNQAQEITGCRPKWKTYTYECSQGTLTCKGRNNACAATVCDCDRLAAICFAGAPYNDNNYNIDLKARCQ
General information:
TITO was launched using:
RESULT:
Template:
1YXH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77112 for 872 contacts (-88.4/contact) +
2D Compatibility (PS) -12748 + (NN) -6511 + (LL) 0
1D Compatibility (HY) -14400 + (ID) 4300
Total energy: -115071.0 ( -131.96 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_1YXH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YXH-query.scw
PDB file :
Tito_Scwrl_1YXH.pdb
: