Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
4ITR Chain:D ((3-179))
--TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP------------
General information:
TITO was launched using:
RESULT:
Template:
4ITR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137522 for 1427 contacts (-96.4/contact) +
2D Compatibility (PS) -18767 + (NN) -7456 + (LL) 1052
1D Compatibility (HY) -26000 + (ID) 8850
Total energy: -197543.0 ( -138.43 by residue)
QMean score : 0.744
(partial model without unconserved sides chains):
PDB file :
Tito_4ITR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ITR-query.scw
PDB file :
Tito_Scwrl_4ITR.pdb
: