Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
4M1T Chain:C ((2-169))
MTEYKLVVVGACGVGKSALTIQLIQNHFV---------SYRKQVVIDGETSLLDILDTAG--------DQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKE---------------------
General information:
TITO was launched using:
RESULT:
Template:
4M1T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112256 for 1256 contacts (-89.4/contact) +
2D Compatibility (PS) -16968 + (NN) -7626 + (LL) 2728
1D Compatibility (HY) -19200 + (ID) 7050
Total energy: -160372.0 ( -127.68 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_4M1T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M1T-query.scw
PDB file :
Tito_Scwrl_4M1T.pdb
: