Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALKSLVVLPLLVLVLLLVRVQPSLGKESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV
3DJV Chain:B ((1-124))
--------------------------KESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV
General information:
TITO was launched using:
RESULT:
Template:
3DJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20145 for 807 contacts (-25.0/contact) +
2D Compatibility (PS) -13905 + (NN) -11581 + (LL) 3040
1D Compatibility (HY) -14800 + (ID) 6200
Total energy: -63591.0 ( -78.80 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_3DJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DJV-query.scw
PDB file :
Tito_Scwrl_3DJV.pdb
: