Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLMVVLSLIAAAWAEEQNKLVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKPNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLVCGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQAK
1LO6 Chain:A ((1-221))
---------------------LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKPNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLVCGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ--
General information:
TITO was launched using:
RESULT:
Template:
1LO6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147008 for 1922 contacts (-76.5/contact) +
2D Compatibility (PS) -24064 + (NN) -12342 + (LL) 2884
1D Compatibility (HY) -29600 + (ID) 11050
Total energy: -221180.0 ( -115.08 by residue)
QMean score : 0.771
(partial model without unconserved sides chains):
PDB file :
Tito_1LO6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LO6-query.scw
PDB file :
Tito_Scwrl_1LO6.pdb
: