Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRPLNCIVAVSQNMGIGKNGDLPWPLLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPQGAHFLAKSLDDALKLIEQPELASKVDMVWVVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLEKYKLLPEYPGVLSEIQEEKGIKYKFEVYEKKD
4KFJ Chain:B ((1-186))
-VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND
General information:
TITO was launched using:
RESULT:
Template:
4KFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123270 for 1401 contacts (-88.0/contact) +
2D Compatibility (PS) -19978 + (NN) -9759 + (LL) 208
1D Compatibility (HY) -26000 + (ID) 8350
Total energy: -187149.0 ( -133.58 by residue)
QMean score : 0.707
(partial model without unconserved sides chains):
PDB file :
Tito_4KFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KFJ-query.scw
PDB file :
Tito_Scwrl_4KFJ.pdb
: