Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
3NTP Chain:A ((10-167))
-----KLPPGWEKAMSRSSGRVYYFNHITNASQWERPSG-----------EPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
General information:
TITO was launched using:
RESULT:
Template:
3NTP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26072 for 1112 contacts (-23.4/contact) +
2D Compatibility (PS) -15871 + (NN) -10545 + (LL) -264
1D Compatibility (HY) -15600 + (ID) 7300
Total energy: -75652.0 ( -68.03 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_3NTP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NTP-query.scw
PDB file :
Tito_Scwrl_3NTP.pdb
: