Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKLSVFFIFLFCSIATAAESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKKPSKPSN
1VGN Chain:B ((4-221))
---------------------LPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESK-------
General information:
TITO was launched using:
RESULT:
Template:
1VGN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90013 for 1920 contacts (-46.9/contact) +
2D Compatibility (PS) -24242 + (NN) -15475 + (LL) 1996
1D Compatibility (HY) -31200 + (ID) 10900
Total energy: -169834.0 ( -88.46 by residue)
QMean score : 0.733
(partial model without unconserved sides chains):
PDB file :
Tito_1VGN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VGN-query.scw
PDB file :
Tito_Scwrl_1VGN.pdb
: