Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIENRQTITIGGSEIYTGQLHGVDVALLKSGIGKVAAATGATLLLERCQPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLVAAAEDCIKALDLNAVRGLIVSGDAFINGSVALAKIRHNFPQAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLSFEEFLAVAARQSTLMVENLVQNLARG
4F3C Chain:B ((17-246))
MKIGIIGAMEEEVTLLRDKIDNRQTITLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDETRYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAESCIRELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPDAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSTLMVETLVQKLA--
General information:
TITO was launched using:
RESULT:
Template:
4F3C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178503 for 2089 contacts (-85.4/contact) +
2D Compatibility (PS) -25220 + (NN) -19002 + (LL) -72
1D Compatibility (HY) -32000 + (ID) 10300
Total energy: -265097.0 ( -126.90 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_4F3C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F3C-query.scw
PDB file :
Tito_Scwrl_4F3C.pdb
: