Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATVEPETTPTPNPPPAEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV
1L8B Chain:A ((9-190))
-----------------------------------KHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATK-----KNRFVV
General information:
TITO was launched using:
RESULT:
Template:
1L8B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77304 for 1325 contacts (-58.3/contact) +
2D Compatibility (PS) -18620 + (NN) -8190 + (LL) 1268
1D Compatibility (HY) -25600 + (ID) 8850
Total energy: -137296.0 ( -103.62 by residue)
QMean score : 0.683
(partial model without unconserved sides chains):
PDB file :
Tito_1L8B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L8B-query.scw
PDB file :
Tito_Scwrl_1L8B.pdb
: