Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDVGAAPPGAAPAPGIFSSQPGHTPHPAASRDPVARTSPLQTPAAPGAAAGPALSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFSWLSLKTLLSLALVGACITLGAYLGHK
4LVT Chain:B ((9-163))
--------YDNREIVMKYIHYKLSQRGYEWDA---------------------------------------------------------SEVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGP-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4LVT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117953 for 1030 contacts (-114.5/contact) +
2D Compatibility (PS) -14758 + (NN) -4345 + (LL) 3716
1D Compatibility (HY) -22000 + (ID) 6850
Total energy: -162190.0 ( -157.47 by residue)
QMean score : 0.319
(partial model without unconserved sides chains):
PDB file :
Tito_4LVT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LVT-query.scw
PDB file :
Tito_Scwrl_4LVT.pdb
: