Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEVSAKVSEALEKRYSMTEHKRQVPASMFDDWWK
1EE1 Chain:B ((1-271))
-SMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHG----EDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYL---------------------ISYDEIDDYLEGKEVSAKVSEALEKRYSMTEHKRQVPASMFDDWWK
General information:
TITO was launched using:
RESULT:
Template:
1EE1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64559 for 1943 contacts (-33.2/contact) +
2D Compatibility (PS) -26847 + (NN) -11767 + (LL) 1276
1D Compatibility (HY) -30000 + (ID) 12300
Total energy: -144197.0 ( -74.21 by residue)
QMean score : 0.683
(partial model without unconserved sides chains):
PDB file :
Tito_1EE1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EE1-query.scw
PDB file :
Tito_Scwrl_1EE1.pdb
: