Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAASGEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAYLPQKTASSSHPSA
4FYI Chain:D ((4-142))
----------SVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEH--------------GGDQFIHEQNLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEA--------------
General information:
TITO was launched using:
RESULT:
Template:
4FYI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84878 for 932 contacts (-91.1/contact) +
2D Compatibility (PS) -13955 + (NN) -9235 + (LL) 2172
1D Compatibility (HY) -18400 + (ID) 6200
Total energy: -130496.0 ( -140.02 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_4FYI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FYI-query.scw
PDB file :
Tito_Scwrl_4FYI.pdb
: