Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSPLNQSAEGLPQEASNRSLNATETSEAWDPRTLQALKISLAVVLSVITLATVLSNAFVLTTILLTRKLHTPANYLIGSLATTDLLVSILVMPISIAYTITHTWNFGQILCDIWLSSDITCCTASILHLCVIALDRYWAITDALEYSKRRTAGHAATMIAIVWAISICISIPPL---FWRQAKAQE----EMSDCLVNTSQISYTIYSTCGAFYIPSVLLIILYGRIYRAARNRILNPPSLYGKRFTTAHLITGSAGSSLCSLNSSLHEGHSHSAGSPLFFNHVKIKLADSALERKRISAARERKATKILGIILGAFIICWLPFFVVSLVLPICRDSCWIHPALFDFFTWLGYLNSLINPIIYTVFNEEFRQAFQKIVPFRKAS
2YCY Chain:B ((9-299))-----------------------------------QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQI---------------------------------------------------RKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL--VPDWLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLLAF----


General information:
TITO was launched using:
RESULT:

Template: 2YCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -227327 for 2098 contacts (-108.4/contact) +
2D Compatibility (PS) -28835 + (NN) 1267 + (LL) 4068
1D Compatibility (HY) -34400 + (ID) 5800
Total energy: -291027.0 ( -138.72 by residue)
QMean score : 0.387

(partial model without unconserved sides chains):
PDB file : Tito_2YCY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2YCY-query.scw
PDB file : Tito_Scwrl_2YCY.pdb: