Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLPPGSNGTAYPGQFALYQQLAQGNAVGGSAGAPPLGPSQVVTACLLTLLIIWTLLGNVLVCAAIVRSRHLRANMTNVFIVSLAVSDLFVALLVMPWKAVAEVAGYWPFGAF-CDVWVAFDIMCSTASILNLCVISVDRYWAISRPFRYKRKMTQRMALVMVGLAWTLSILISFIPVQLNWHRDQAASWGGLDLPNNLANWTPWEEDFWEPDVNAENCDSSLNRTYAISSSLISFYIPVAIMIVTYTRIYRIAQVQIRRISSLERAAEHAQSCRSSAACAPDTSLRASIKKETKVLKTLSVIMGVFVCCWLPFFILNCMVPFCSGHPEGPPAGFPCVSETTFDVFVWFGWANSSLNPVIYAFNADFQKVFAQLLGCSHFCSRTPVETVNISNELISYNQDIVFHKEIAAAYIHMMPNAVTPGNREVDNDEEEGPFDRMFQIYQTSPDGDPVAESVWELDCEGEISLDKITPFTPNGFH |
| 4AMI Chain:B ((17-299)) | ---------------------------------------------LMALVVLLIVAGNVLVIAAIGSTQRLQ-TLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDED--------PQAL-------KCYQDPGC----CDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRK------------S-------------RVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF----------NRDLVPDWLFVAFNWLGYANSAMNPIIYCRSPDFRKAFKRLL-------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AMI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -236466 for 2049 contacts (-115.4/contact) +
2D Compatibility (PS) -27940 + (NN) -6611 + (LL) 8440
1D Compatibility (HY) -36800 + (ID) 6600
Total energy: -305977.0 ( -149.33 by residue)
QMean score : 0.346
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