Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNVSGCPGAGNASQAGGGGGWHPEAVIVPLLFALIFLVGTVGNTLVLAVLLRGGQAVSTTNLFILNLGVADLCFILCCVPFQATIYTLDGWVFGSLLCKAVHFLIFLTMHASSFTLAAVSLDRYLAIRYPLHSRELRTPRNALAAIGLIWGLSLLFSGPYLSYYRQSQLANLTVCHPAWSAPR---RRAMDICTFVFSYLLPVLVLGLTYARTLRYLWRAVDPVAAGSGAR-RAKRKVTRMILIVAALFCLCWMPHHALILCVWF-----GQFPLTRATYALRILSHLVSYANSCVNPIVYALVSKHFRKGFRTICAGLLGRAPGRASGRVCAAARGTHSGSVLERESSDLLHMSEAAGALRPCPGASQPCILEPCPGPSWQGPKAGDSILTVDVA |
4RWD Chain:B ((122-405)) | ------------------------AIAITALYSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALAD-ALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTRPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVR--LLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVI-VWTLVDIDRRDPLVVAALHLCI---ALGYANSSLNPVLYAFLDENFKRCFRQL--------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RWD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -270774 for 2123 contacts (-127.5/contact) +
2D Compatibility (PS) -28461 + (NN) -9796 + (LL) 2624
1D Compatibility (HY) -27600 + (ID) 4600
Total energy: -338607.0 ( -159.49 by residue)
QMean score : 0.369
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