Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGNASNDSQSEDCETRQWLPPGESPAISSVMFSAGVLGNLIALALLARRWRGDVGCSAGRRSSLSLFHVLVTELVFTDLLGTCLISPVVLASYARNQTLVALAPESRACTYFAFAMTFFSLATMLMLFAMALERYLSIGHPYFYQRRVSRSGGLAVLPVIYAVSLLFCSLPLLDYGQYVQYCPGTWCFIRHGRTA-----YLQLYATLLLLLIVSVLACNFSVILNLIRMHRRSRRSRCGPSLGSG----------------------------------------------------------------------------------------------------------RG-----------------------------GPGARRRGERVSMAEETDHLILLAIMTITFAVCSLPFTIFAYMNETSS------------RKEKWDLQALRFLSINSIIDPWVFAILRPPVLRLMRSVLCCRISLRTQDATQTSCSTQSDASKQADL |
| 3ODU Chain:A ((44-498)) | ----------------ANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQ-----------KKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAV--ANWYF---GNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSE-ADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -210785 for 2120 contacts (-99.4/contact) +
2D Compatibility (PS) -31329 + (NN) -6821 + (LL) 1536
1D Compatibility (HY) -10800 + (ID) 2450
Total energy: -260649.0 ( -122.95 by residue)
QMean score : 0.204
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