Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASSTTRGPRVSDLFSGLPPAVTTPANQSAEASAGNGSVAGADAPAVTPFQSLQLVHQLKGLIVLLYSVVVVVGLVGNCLLVLVIARVRRLHNVTNFLIGNLALSDVLMCTACVPLTLA-YAFEPRGWVFGGGLCHLVFFLQPVTVYVSVFTLTTIAVDRYVVLVHPLRRRISLRLSAYAVL---AIWALSAVLALPAAVHTYHVELKPHD--VRLCEEFWGSQERQRQLYAWGLLLVTYLLPLLVILLSYVRVSVKLRNRVVPGCVTQSQADWDRARRRRTFCLLVVIVVVFAVCWLPLHVFNL---LRDLDPHAIDPYAFGLVQLLCHWLAMSSACYNPFIYAWLHDSFREELRKLLVAWPRKIAPHGQNMTVSVVI |
| 4N6H Chain:A ((128-408)) | --------------------------------------------------------------ITALYSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSAKYLMET--WPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPV-KALDFRTPAKAKLINICIWVLASGVGVPIMVMAVT---RPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVR----LLSGSKEKDRSLRRITR-MVLVVVGAFVVCWAPIHIFVIVWTLVDIDRR--DPLVVAALH-LCIALGYANSSLNPVLYAFLDENFKRCFRQLCRKPCG--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4N6H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -269849 for 2065 contacts (-130.7/contact) +
2D Compatibility (PS) -27829 + (NN) -8952 + (LL) 4916
1D Compatibility (HY) -31600 + (ID) 4700
Total energy: -338014.0 ( -163.69 by residue)
QMean score : 0.345
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