Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCGDVTSAVAPCMSYASGK----ASA-----PSGACCSGVRTLNAKASTPADRKAACNC--LKNLAGS-----GI------------------SMGNAASIPGKCGVSVSIPISTKTNCNNLH
1B1U Chain:A ((15-109))
--------NPLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI--------PAY--CRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIH------------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23559 for 372 contacts (-63.3/contact) +
2D Compatibility (PS) -5920 + (NN) 1398 + (LL) 1268
1D Compatibility (HY) -3600 + (ID) 500
Total energy: -30913.0 ( -83.10 by residue)
QMean score : 0.215
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: