Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCGQVVSMLAPCIMYATGRVS-APTGGCCDGVRTLNSAAATTADRQTTCACLKQQ-TSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH
2RKN Chain:A ((4-75))
-LCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGS-FGVDPELASALPKQCGLANAP------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35042 for 475 contacts (-73.8/contact) +
2D Compatibility (PS) -7010 + (NN) 476 + (LL) 1464
1D Compatibility (HY) -400 + (ID) 750
Total energy: -41262.0 ( -86.87 by residue)
QMean score : 0.197
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: