Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATACDATQLTPCAG-----AIIGSSPPTAACCSRLKEQ------QPCLCTYARDPNLQRYVNSPNG-KKAMAACK--------VPVPSC
1VD2 Chain:A ((11-99))
GPLGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHVFPC
General information:
TITO was launched using:
RESULT:
Template:
1VD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23872 for 375 contacts (-63.7/contact) +
2D Compatibility (PS) -7629 + (NN) -2829 + (LL) 0
1D Compatibility (HY) -4000 + (ID) 400
Total energy: -38730.0 ( -103.28 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_1VD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VD2-query.scw
PDB file :
Tito_Scwrl_1VD2.pdb
: