Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGCDASALRPCVGAIMLGGA-------------VTPGCCARLRAQRACLCQYARDPSYR---GYVNSPRAQSVVAACGLPGPKC
2CKX Chain:A ((578-660))
RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQ-
General information:
TITO was launched using:
RESULT:
Template:
2CKX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37448 for 422 contacts (-88.7/contact) +
2D Compatibility (PS) -7506 + (NN) -3555 + (LL) 56
1D Compatibility (HY) -1600 + (ID) 500
Total energy: -50553.0 ( -119.79 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_2CKX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CKX-query.scw
PDB file :
Tito_Scwrl_2CKX.pdb
: