Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APRGAHGAGECGKTPADKMA--LKLAPCASAGQDPKSV-----------------PSSGCCTAVHTIGKQSPKCLCAVMLSDTAK---S-AG--I---KPEVAMSIPKRCNLVDRPVGYKCGAYTLP
1W2Q Chain:A ((7-112))
------RGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR--------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23351 for 476 contacts (-49.1/contact) +
2D Compatibility (PS) -7936 + (NN) -1622 + (LL) 452
1D Compatibility (HY) -3600 + (ID) 600
Total energy: -36657.0 ( -77.01 by residue)
QMean score : 0.173
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: