Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGPAAGGAAVADPAGCQDDVV--ALNEACYKYVQKG----APTV------PPSQECCDAVKSVDVPCVCSYLGSPGVRDNI--------SMEKVFYVSQQCGVSIPGNCGGSKV
1S6D Chain:A ((8-101))
------------ESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAI--MMMLNEPMWIRMRDQVMSMAHNLPIECNLM-SQPC-----
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38986 for 501 contacts (-77.8/contact) +
2D Compatibility (PS) -7678 + (NN) -1666 + (LL) 212
1D Compatibility (HY) -4400 + (ID) 750
Total energy: -53268.0 ( -106.32 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: