Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GPAGCQDDVVA--LNEACYQYVQKG---APTV----------PPSQECCDAVKSVDVPCVCSYLGSPGVRDNI------------SMEKVFYVSQQCGVSIPGNCGGSMV
1SM7 Chain:A ((3-105))
--QKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLK-QAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCP----
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46060 for 545 contacts (-84.5/contact) +
2D Compatibility (PS) -7900 + (NN) -847 + (LL) -140
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -57347.0 ( -105.22 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: