Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DLRKGCYDLGI--TVLMGCPDSIDK-----KLPAPP-----TPSEGCCTLVRTIGMKCVCEIVNKKIEDTI-------------DMQKLVNVAAACGRPLAPGSQCGSYRVPGA
2LVF Chain:A ((6-101))
---EECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39663 for 428 contacts (-92.7/contact) +
2D Compatibility (PS) -7237 + (NN) -496 + (LL) 372
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -50024.0 ( -116.88 by residue)
QMean score : 0.256
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: