Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QVCGANLS--GLMNECQRYVSNA-----GPNSQ-----PPSRSCCALIRPIDVPCACRYVSRDVTNYI-------------DMDKVVYVARSCGKKIPSGYKCGSYTIPAA
2LVF Chain:A ((7-101))
-ECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36420 for 430 contacts (-84.7/contact) +
2D Compatibility (PS) -7207 + (NN) -1504 + (LL) 492
1D Compatibility (HY) -4400 + (ID) 550
Total energy: -49589.0 ( -115.32 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: