Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AAPSSAQGTTTPADASGAVPSCASKLVTCAGYLNT----TD---T----P-----------PESCCDPLKEAATTQAACMCAILMNK--AALQAFG-------VAPEQGVLLAKRCGVTNDASTCAK
1PSY Chain:A ((25-116))
-----------------------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV---------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18033 for 397 contacts (-45.4/contact) +
2D Compatibility (PS) -6492 + (NN) -2404 + (LL) 1156
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -28873.0 ( -72.73 by residue)
QMean score : 0.184
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: